clusterProfiler
This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.
Authors
Guangchuang YU, School of Public Health, The University of Hong Kong http://ygc.name
Citation
Please cite the following article when using clusterProfiler
:
Yu G, Wang L, Han Y and He Q.
clusterProfiler: an R package for comparing biological themes among gene clusters.
OMICS: A Journal of Integrative Biology, 2012, 16(5):284-287.
URL: http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118
License
All source code is copyright, under the Artistic-2.0 License. For more information on Artistic-2.0 License see http://opensource.org/licenses/Artistic-2.0
Installation
To install:
- the latest released version:
biocLite("clusterProfiler")
- the latest development version:
install_github(c("GuangchuangYu/DOSE", "GuangchuangYu/clusterProfiler"))
Documentation
- Why clusterProfiler fails
- KEGG enrichment analysis with latest online data using clusterProfiler
- DAVID functional analysis with clusterProfiler
- Enrichment map
- a formula interface for GeneOntology analysis
To view the vignette of clusterProfiler
installed in your system, start R
and enter:
vignette("clusterProfiler", package="clusterProfiler")
Bugs/Feature requests
- If you have any, let me know. Thx!