clusterProfiler (version 2.4.1)

GSEA: GSEA

Description

a universal gene set enrichment analysis tools

Usage

GSEA(geneList, exponent = 1, nPerm = 1000, minGSSize = 10, pvalueCutoff = 0.05, pAdjustMethod = "BH", TERM2GENE, TERM2NAME = NA, verbose = TRUE)

Arguments

geneList

order ranked geneList

exponent

weight of each step

nPerm

number of permutations

minGSSize

minimal size of each geneSet for analyzing

pvalueCutoff

pvalue cutoff

pAdjustMethod

p value adjustment method

TERM2GENE

user input annotation of TERM TO GENE mapping, a data.frame of 2 column with term and gene

TERM2NAME

user input of TERM TO NAME mapping, a data.frame of 2 column with term and name

verbose

logical

Value

gseaResult object