clusterProfiler (version 2.4.1)

groupGO: Functional Profile of a gene set at specific GO level. Given a vector of genes, this function will return the GO profile at a specific level.

Description

Functional Profile of a gene set at specific GO level. Given a vector of genes, this function will return the GO profile at a specific level.

Usage

groupGO(gene, organism = "human", ont = "CC", level = 2, readable = FALSE)

Arguments

gene

a vector of entrez gene id.

organism

One of "anopheles", "arabidopsis", "bovine", "canine", "chicken", "chimp", "coelicolor", "ecolik12","ecsakai", "fly", "gondii","human", "malaria", "mouse", "pig", "rat","rhesus", "worm", "xenopus", "yeast" and "zebrafish".

ont

One of "MF", "BP", and "CC" subontologies.

level

Specific GO Level.

readable

if readable is TRUE, the gene IDs will mapping to gene symbols.

Value

A groupGOResult instance.

See Also

groupGOResult-class, compareCluster

Examples

data(gcSample)
	yy <- groupGO(gcSample[[1]], organism="human", ont="BP", level=2)
	head(summary(yy))
	#plot(yy)