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clusterProfiler (version 3.0.2)

simplify: simplify method

Description

simplify output from enrichGO by removing redundancy of enriched GO terms

simplify output from compareCluster by removing redundancy of enriched GO terms

Usage

## S3 method for class 'enrichResult':
simplify(x, cutoff = 0.7, by = "p.adjust",
  select_fun = min, measure = "Rel")
## S3 method for class 'compareClusterResult':
simplify(x, cutoff = 0.7, by = "p.adjust",
  select_fun = min, measure = "Rel")

Arguments

x
output of enrichGO
cutoff
similarity cutoff
by
feature to select representative term, selected by 'select_fun' function
select_fun
function to select feature passed by 'by' parameter
measure
method to measure similarity

Value

  • updated enrichResult object

    updated compareClusterResult object

References

issue #28 https://github.com/GuangchuangYu/clusterProfiler/issues/28