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clusterProfiler (version 3.0.4)

GSEA: GSEA

Description

a universal gene set enrichment analysis tools

Usage

GSEA(geneList, exponent = 1, nPerm = 1000, minGSSize = 10, maxGSSize = 500, pvalueCutoff = 0.05, pAdjustMethod = "BH", TERM2GENE, TERM2NAME = NA, verbose = TRUE, seed = FALSE)

Arguments

geneList
order ranked geneList
exponent
weight of each step
nPerm
number of permutations
minGSSize
minimal size of each geneSet for analyzing
maxGSSize
maximal size of genes annotated for testing
pvalueCutoff
pvalue cutoff
pAdjustMethod
p value adjustment method
TERM2GENE
user input annotation of TERM TO GENE mapping, a data.frame of 2 column with term and gene
TERM2NAME
user input of TERM TO NAME mapping, a data.frame of 2 column with term and name
verbose
logical
seed
logical

Value

gseaResult object