clusterProfiler (version 3.0.4)

enrichDAVID: enrichDAVID

Description

enrichment analysis by DAVID

Usage

enrichDAVID(gene, idType = "ENTREZ_GENE_ID", listType = "Gene", minGSSize = 10, maxGSSize = 500, annotation = "GOTERM_BP_FAT", pvalueCutoff = 0.05, pAdjustMethod = "BH", qvalueCutoff = 0.2, species = NA, david.user)

Arguments

gene
input gene
idType
id type
listType
list Type
minGSSize
minimal size of genes annotated for testing
maxGSSize
maximal size of genes annotated for testing
annotation
david annotation
pvalueCutoff
pvalueCutoff
pAdjustMethod
one of "BH" and "bonferroni"
qvalueCutoff
qvalutCutoff
species
species
david.user
david user

Value

A enrichResult instance