enrichMKEGG

gene

supported organism listed in 'http://www.genome.jp/kegg/catalog/org_list.html'

organism

one of "kegg", 'ncbi-geneid', 'ncib-proteinid' and 'uniprot'

keyType

pvalueCutoff

one of "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none"

pAdjustMethod

universe

minimal size of genes annotated by Ontology term for testing.

minGSSize

maximal size of genes annotated for testing

maxGSSize

qvalueCutoff


KEGG Module Enrichment Analysis of a gene set.
Given a vector of genes, this function will return the enrichment KEGG Module
categories with FDR control.


This package implements methods to analyze and visualize
functional profiles (GO and KEGG) of gene and gene clusters.

Guangchuang Yu

clusterProfiler

statistical analysis and visualization of functional profiles for
genes and gene clusters

enrichMKEGG function

KEGG Module Enrichment Analysis of a gene set.
Given a vector of genes, this function will return the enrichment KEGG Module
categories with FDR control.

enrichMKEGG: KEGG Module Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enrichment KEGG Module categories with FDR control.

Description

Usage

Arguments

Value