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clusterProfiler (version 3.0.4)

gseGO: gseGO

Description

Gene Set Enrichment Analysis of Gene Ontology

Usage

gseGO(geneList, ont = "BP", OrgDb, keytype = "ENTREZID", exponent = 1, nPerm = 1000, minGSSize = 10, maxGSSize = 500, pvalueCutoff = 0.05, pAdjustMethod = "BH", verbose = TRUE, seed = FALSE)

Arguments

geneList
order ranked geneList
ont
one of "BP", "MF", "CC" or "GO"
OrgDb
OrgDb
keytype
keytype of gene
exponent
weight of each step
nPerm
permutation numbers
minGSSize
minimal size of each geneSet for analyzing
maxGSSize
maximal size of genes annotated for testing
pvalueCutoff
pvalue Cutoff
pAdjustMethod
pvalue adjustment method
verbose
print message or not
seed
logical

Value

gseaResult object