clustermole_markers

Retrieve the full list of cell type markers in the <code>clustermole</code> database.

Assignment of cell type labels to single-cell RNA sequencing (scRNA-seq) clusters is often a time-consuming process that involves manual inspection of the cluster marker genes complemented with a detailed literature search. This is especially challenging when unexpected or poorly described populations are present. The clustermole R package provides methods to query thousands of human and mouse cell identity markers sourced from a variety of databases.

Igor Dolgalev

clustermole

Unbiased Single-Cell Transcriptomic Data Cell Type
Identification

clustermole_markers function

<dl><dt>species</dt>
<dd>Species: <code>hs</code> for human or <code>mm</code> for mouse.</dd></dl>

Arguments

Available cell type markers — clustermole_markers

<dl>

<dt>species</dt>
<dd>Species: <code>hs</code> for human or <code>mm</code> for mouse.</dd>

</dl>

clustermole_markers: Available cell type markers

Description

Usage

Value

Arguments

Examples