traj_rep

Function to run trajectories inside mclapply with one core.

Clusters longitudinal trajectories over time (can be unequally
spaced, unequal length time series and/or partially overlapping series) on
a common time axis. Performs k-means clustering on a single continuous
variable measured over time, where each mean is defined by a thin plate
spline fit to all points in a cluster. Distance is MSE across trajectory
points to cluster spline. Provides graphs of derived cluster splines,
silhouette plots, and Adjusted Rand Index evaluations of the number
of clusters. Scales well to large data with multicore parallelism available
to speed computation.

George Ostrouchov

clustra

Clustering Longitudinal Trajectories

David Gagnon

Hanna Gerlovin

Chen Wei-Chen

Schmidt Drew

Oak Ridge National Laboratory 

U.S. Department of Veteran's Affairs 

traj_rep function

<dl><dt>group</dt>
<dd>Vector of starting group values for unique id's.</dd>
<dt>data</dt>
<dd>The data (see <code>clustra</code> description).</dd>
<dt>k</dt>
<dd>Integer number of clusters.</dd>
<dt>maxdf</dt>
<dd>Fitting parameters. See <code>trajectories</code>.</dd>
<dt>conv</dt>
<dd>Fitting parameters. See <code>trajectories</code>.</dd></dl>

Arguments

Function to run trajectories inside mclapply with one core. — traj_rep

<dl>

<dt>group</dt>
<dd>Vector of starting group values for unique id's.</dd>


<dt>data</dt>
<dd>The data (see <code>clustra</code> description).</dd>


<dt>k</dt>
<dd>Integer number of clusters.</dd>


<dt>maxdf</dt>
<dd>Fitting parameters. See <code>trajectories</code>.</dd>


<dt>conv</dt>
<dd>Fitting parameters. See <code>trajectories</code>.</dd>

</dl>

traj_rep: Function to run trajectories inside mclapply with one core.

Description

Usage

Value

Arguments