calc_sc3_stability

Calculate the SC3 stability index for every cluster at every resolution in a
set of clusterings. The index varies from 0 to 1, where 1 suggests that a
cluster is more stable across resolutions. See <code>calc_sc3_stability_cluster()</code>
for more details.

internal

Deciding what resolution to use can be a difficult question when
approaching a clustering analysis. One way to approach this problem is to
look at how samples move as the number of clusters increases. This package
allows you to produce clustering trees, a visualisation for interrogating
clusterings as resolution increases.

Luke Zappia

clustree

Visualise Clusterings at Different Resolutions

Alicia Oshlack

Andrea Rau

Paul Hoffman

calc_sc3_stability function

<dl><dt>clusterings</dt>
<dd>numeric matrix containing clustering information, each
column contains clustering at a separate resolution</dd></dl>

Arguments

Calculate SC3 stability — calc_sc3_stability

<dl>

<dt>clusterings</dt>
<dd>numeric matrix containing clustering information, each
column contains clustering at a separate resolution</dd>

</dl>

calc_sc3_stability: Calculate SC3 stability

Description

Usage

Value

Arguments