example_path

This function was created as a helper function to generate file paths to our
internal data. You should use this function if you
want to follow along with the example, or interact with the data

A tool that implements the clustering algorithms from 'mothur' (Schloss PD et al. (2009) <doi:10.1128/AEM.01541-09>). 'clustur' make use of the cluster() and make.shared() command from 'mothur'. Our cluster() function has five different algorithms implemented: 'OptiClust', 'furthest', 'nearest', 'average', and 'weighted'. 'OptiClust' is an optimized clustering method for Operational Taxonomic Units, and you can learn more here, (Westcott SL, Schloss PD (2017) <doi:10.1128/mspheredirect.00073-17>). The make.shared() command is always applied at the end of the clustering command. This functionality allows us to generate and create clustering and abundance data efficiently.

Patrick Schloss

clustur

Clustering

Gregory Johnson

Sarah Westcott

example_path function

<dl><dt>file</dt>
<dd>The file name of the data; leave as NULL (default) to get full
list of example files</dd></dl>

Arguments

Example Path — example_path

<dl>

<dt>file</dt>
<dd>The file name of the data; leave as NULL (default) to get full
list of example files</dd>

</dl>

example_path: Example Path

Description

Usage

Value

Arguments

Examples