cmsafops (version 1.3.0)

box_mergetime: Function to combine NetCDF files and simultaneously cut a region (and level).

Description

This function selects a region (and optionally a level) from a bunch of NetCDF files that match the same pattern of the filename, and writes the output to a new file. If no longitude and latitude values are given, files are only merged. All input files have to have the same grid and the same variable. The reference time of the output file is determined by the first input file.

Usage

box_mergetime(
  var,
  path,
  pattern,
  outfile,
  lon1 = -180,
  lon2 = 180,
  lat1 = -90,
  lat2 = 90,
  level = NULL,
  nc34 = 4,
  overwrite = FALSE,
  verbose = FALSE
)

Value

A NetCDF file including the merged time series of the selected region is written. The resulting file uses the meta data of the first input file.

Arguments

var

Name of NetCDF variable (character).

path

The directory of input NetCDF files without / at the end (character).

pattern

A part of the filename, which is the same for all desired input files (character). The pattern has to be a character string containing a regular expression.

outfile

Filename of output NetCDF file. This may include the directory (character).

lon1

Longitude of lower left corner (numeric).

lon2

Longitude of upper right left corner (numeric).

lat1

Latitude of lower left corner (numeric).

lat2

Latitude of upper right corner (numeric). Longitude of upper right corner (numeric).

level

Number of level that should be extracted (integer) or NULL.

nc34

NetCDF version of output file. If nc34 = 3 the output file will be in NetCDFv3 format (numeric). Default output is NetCDFv4.

overwrite

logical; should existing output file be overwritten?

verbose

logical; if TRUE, progress messages are shown

See Also

Other data manipulation functions: acsaf_box_mergetime(), add_grid_info(), cmsaf.transform.coordinate.system(), levbox_mergetime(), remap()

Examples

## Create an example NetCDF file with a similar structure as used by CM
## SAF. The file is created with the ncdf4 package.  Alternatively
## example data can be freely downloaded here: 

library(ncdf4)

## create some (non-realistic) example data

lon <- seq(5, 15, 0.5)
lat <- seq(45, 55, 0.5)
time <- c(as.Date("2000-01-01"), as.Date("2001-02-01"))
origin <- as.Date("1983-01-01 00:00:00")
time <- as.numeric(difftime(time, origin, units = "hour"))
data1 <- array(250:350, dim = c(21, 21, 1))
data2 <- array(230:320, dim = c(21, 21, 1))

## create two simple example NetCDF files

x <- ncdim_def(name = "lon", units = "degrees_east", vals = lon)
y <- ncdim_def(name = "lat", units = "degrees_north", vals = lat)
t <- ncdim_def(name = "time", units = "hours since 1983-01-01 00:00:00",
 vals = time[1], unlim = TRUE)
var1 <- ncvar_def("SIS", "W m-2", list(x, y, t), -1, prec = "short")
vars <- list(var1)
ncnew <- nc_create(file.path(tempdir(),"CMSAF_example_file_n1.nc"), vars)
ncvar_put(ncnew, var1, data1)
ncatt_put(ncnew, "lon", "standard_name", "longitude", prec = "text")
ncatt_put(ncnew, "lat", "standard_name", "latitude", prec = "text")
nc_close(ncnew)
t <- ncdim_def(name = "time", units = "hours since 1983-01-01 00:00:00",
 vals = time[2], unlim = TRUE)
ncnew <- nc_create(file.path(tempdir(),"CMSAF_example_file_n2.nc"), vars)
ncvar_put(ncnew, var1, data2)
ncatt_put(ncnew, "lon", "standard_name", "longitude", prec = "text")
ncatt_put(ncnew, "lat", "standard_name", "latitude", prec = "text")
nc_close(ncnew)

## Cut a region and merge both example CM SAF NetCDF files into one
## output file.  Get path information of working directory with getwd()
## command.
box_mergetime(var = "SIS", path= tempdir(), pattern = "CMSAF_example_file_n",
 outfile = file.path(tempdir(),"CMSAF_example_file_box_mergetime.nc"), 
 lon1 = 8, lon2 = 12, lat1 = 48, lat2 = 52)

unlink(c(file.path(tempdir(),"CMSAF_example_file_n1.nc"), 
 file.path(tempdir(),"CMSAF_example_file_n2.nc"),
 file.path(tempdir(),"CMSAF_example_file_box_mergetime.nc")))