cn.farms (version 1.20.0)

callSummarize: Defines which variables should be written back when calling a cn.farms run

Description

Defines which variables should be written back when calling a cn.farms run

Usage

callSummarize(object, psInfo, summaryMethod, summaryParam, batchList = NULL, cores = 1, runtype = "ff", returnValues, saveFile = "summData")

Arguments

object

an matrix with normalized intensity values.

psInfo

a data frame stating the physical position.

summaryMethod

the summarization method.

summaryParam

a list with the parameters of the summarization method.

batchList

batchList

cores

cores

runtype

mode how the results are saved. Possible values are ff or bm. If ff is chosen the data will not be saved automatically. With bm the results will be saved permanently.

returnValues

list with return values. For possible values see summaryMethod.

saveFile

name of the file to save.

Value

Results of FARMS run with specified parameters - exact FARMS version