normalizeSequenceEffect

an instance of
<code><a rd-options="Biobase:ExpressionSet-class" href="/link/ExpressionSet?package=cn.farms&version=1.20.0&to=Biobase%3AExpressionSet-class" data-mini-rdoc="Biobase:ExpressionSet-class::ExpressionSet">ExpressionSet</a></code>

object

the directory where the anntotation can be found

annotDir

mode how the results are saved. Possible values are ff or bm.
If ff is chosen the data will not be saved automatically.

runtype

saveFile

This package implements the cn.FARMS algorithm for copy
number variation (CNV) analysis. cn.FARMS allows to analyze the
most common Affymetrix (250K-SNP6.0) array types, supports
high-performance computing using snow and ff.

Andreas Mitterecker

cn.farms

cn.FARMS - factor analysis for copy number estimation

normalizeSequenceEffect function

an instance of
<code><a href="ExpressionSet" rd-options="Biobase:ExpressionSet-class">ExpressionSet</a></code>

normalizeSequenceEffect: Correction for probe sequence effects

Description

Usage

Arguments

Value