cn.farms (version 1.20.0)

plotEvalIc: Creates a plot with known regions and a numeric vector

Description

Creates a plot with known regions and a numeric vector

Usage

plotEvalIc(object, segments, chrom, variable, ylim, ylab = "CN indicator", stripCol = "lightgray", regionCol = rgb(130, 0, 139, maxColorValue = 255), pointSize = 0.75, pointType = 4, bandwidth = c(0.01, 1000), nbin = 100)

Arguments

object

an instance of ExpressionSet

segments

A data.frame with known regions.

chrom

the chromosome.

variable

The numeric vector which should be plotted.

ylim

the limits of the y axis.

ylab

the ylab from function par.

stripCol

color of points.

regionCol

color of regions.

pointSize

size of the points.

pointType

type of the points.

bandwidth

for the color of the plot.

nbin

number of bins for the coloring.

Value

Some data

Examples

load(system.file("exampleData/slData.RData", package = "cn.farms"))
load(system.file("exampleData/testSegments.RData", package = "cn.farms"))
plotEvalIc(slData, fData(testSegments),
     variable = assayData(slData)$L_z[, 1], 23)