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cnvGSA (version 1.16.0)
Gene Set Analysis of (Rare) Copy Number Variants
Description
This package is intended to facilitate gene-set association with rare CNVs in case-control studies.
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Version
Version
1.16.0
1.14.0
1.12.0
1.10.0
Version
1.16.0
License
LGPL
Maintainer
Joseph Lugo
Last Published
February 15th, 2017
Functions in cnvGSA (1.16.0)
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CnvGSAInput-class
Class
"CnvGSAInput"
f.makeViz
Creates the plots from the CnvGSAOutput data.
CnvGSAOutput-class
Class
"CnvGSAOutput"
f.enrFiles
Prepares the files for the enrichment maps.
cnvGSAgsTables
Creates the gene-set tables for each gene-set.
cnvGSAIn
Creating the input S4 object needed to run the script.
cnvGSAlogRegTest
Performing the logistic regression tests on the CNV data.
f.readConfig
Reading in the config file.
cnvGSA-package
Gene-set Analysis of (Rare) Copy Number Variants