allIGtrack

allIG

allimprintedIG

allimprintedIGtrack

BindingMotifAll

BindingMotifMultiple

bindMotifsBiomartTrackDouble

bindMotifsBiomartTrackAll

bindMotifsBiomartTrackMultiple

bindMotifsBiomartTrackSingle

BindingMotifSingle

chipTFtrack

chromHMM_RoadMapSingle

chromHMM_RoadMapAllE063

chromHMM_RoadMapMultiple

chromHMM_RoadMapAll

chromatinHMMRoadMapAll

chromatinHMMRoadMapSingle

chromatinHMMRoadMapMultiple

chromhmmNoPattern

chromhmmPattern

chromhmmtrackone

clinCNV

clinVariant

cpgIstrack

coreilVariant

cosmicVariant

cpgIslandtrack

DupTrack

dnasetrack

DNaseI_RoadMapSingle

dgfootprints_RoadMapSingle

dyaRM

dyaRMtrack

enhFANTOMtrack

eGTexTrackall

eGTexTrackSNP

eQTLTrackAll

eQTLTrackMultiple

eQTLTrackSingle

enhRM

enhRMtrack

gadtrack

gwastrack

geneRtrack

geneNameEnsembl

genesUcsctrack

gctrack

genetrack

grtrack

grtrack4eGTex

histonalltrack

histoneonetrack

iscatrack

imprintedGenesGTEx

interestgenesENSMBLtrack

interesttransENSMBLtrack

miRNATargetRegionsBiomartTrack

matrix_HiC_Rao

metQTLTrackSingle

metQTLTrackAll

metQTLTrackMultiple

OtherRegulatoryRegionsTrackSingle

OtherRegulatoryRegionsTrackAll

otherRegulatoryRegionsTrackAll

otherRegulatoryRegionsTrackSingle

PancreasIG

PancreasIGtrack

PancreasimprintedIG

PancreasimprintedIGtrack

promRMtrack

promRMtrackE063

psiGTex

psiGTexTrackSNP

psiGTexTrackall

regulationENSEMBLtrack

RegulatoryEvidenceBiomartTrackSingle

RegulatoryEvidenceBiomartTrackMultiple

RegulatoryEvidenceBiomartTrackAll

RegulatoryFeaturesBiomartTrackSingle

RegulatoryFeaturesBiomartTrackMultiple

RegulatoryFeaturesBiomartTrackAll

RegulatorySegmentsBiomartTrackSingle

RegulatorySegmentsBiomartTrackMultiple

RegulatorySegmentsBiomartTrackAll

regulatoryEvidenceBiomartTrackAll

regulatoryEvidenceBiomartTrackMultiple

regulatoryEvidenceBiomartTrackSingle

regulatoryFeaturesBiomartTrackAll

regulatoryFeaturesBiomartTrackMultiple

regulatoryFeaturesBiomartTrackSingle

regulatorySegmentsBiomartTrackAll

regulatorySegmentsBiomartTrackMultiple

regulatorySegmentsBiomartTrackSingle

repeatMaskerTrack

rmtrack

snptrack

snpUCSCtrack

StomachIG

strutrack


Some sample data sets used for the illustrative examples and the vignette.


 datasets

 internal

Visualisation of EWAS results in a genomic region. In addition to phenotype-association P-values, coMET also generates plots of co-methylation patterns and provides a series of annotation tracks. It can be used to other omic-wide association scans as long as the data can be translated to genomic level and for any species.

Tiphaine Martin

coMET

coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns

clinCNV function


Data sets


clinCNV: Data sets

Description

Arguments