coMET (version 1.4.4)

genesName_ENSEMBL: Obtain the genes names in the genomic regions of interest from ENSEMBL

Description

Obtain the genes names in the genomic regions of interest from ENSEMBL

Usage

genesName_ENSEMBL(gen, chr, start, end, dataset)

Arguments

gen

the name of the genome

chr

the chromosome of interest

start

the first position in the region of interest (the smallest value)

end

the last position in the region of interest (the largest value)

dataset

Name of the database to select genes

Value

List of name of genes found in this region of interest.

Details

Can be null

References

go to ENSEMBL

http://bioconductor.org/packages/release/bioc/html/Gviz.html

See Also

ISCA_UCSC, GWAScatalog_UCSC, knownGenes_UCSC, GeneReviews_UCSC, GAD_UCSC, genes_ENSEMBL, xenorefGenes_UCSC, transcript_ENSEMBL,

Examples

library("Gviz")
gen <- "hg38"
chr <- "chr7"
start <- 38290160
end <- 38303219

if(interactive()){
  dataset<- "hsapiens_gene_ensembl"
  geneNameEnsembl<- genesName_ENSEMBL(gen,chr,start,end,dataset)
  geneNameEnsembl
} else {
  data(geneNameEnsembl)
  geneNameEnsembl
}