coMET (version 1.4.4)

genes_ENSEMBL: Create one track of the genes in the genomic regions of interest from EMSEMBL

Description

Create one track of the genes in the genomic regions of interest from EMSEMBL using the Gviz bioconductor package

Usage

genes_ENSEMBL(gen, chr, start, end, showId=FALSE)

Arguments

gen

the name of the genome

chr

the chromosome of interest

start

the first position in the region of interest (the smallest value)

end

the last position in the region of interest (the largest value)

showId

Show the ID of the genetic elements

Value

A BiomartGeneRegionTrack object of Gviz

References

http://bioconductor.org/packages/release/bioc/html/Gviz.html

http://genome-euro.ucsc.edu/cgi-bin/hgTrackUi?hgsid=202839739_2hYQ1BAOuBMAR620GjrtdrFAy6dn&c=chr6&g=ensGene

See Also

ISCA_UCSC, GWAScatalog_UCSC, knownGenes_UCSC, genesName_ENSEMBL, GeneReviews_UCSC, GAD_UCSC, xenorefGenes_UCSC, transcript_ENSEMBL,

Examples

library("Gviz")
gen <- "hg19"
chrom <- "chr2"
start <- 38290160
end <- 38303219
if(interactive()) {
  genetrack <-genes_ENSEMBL(gen,chrom,start,end,showId=TRUE)
  plotTracks(genetrack, from = start, to =end) 
} else {
  data(geneENSEMBLtrack)
  plotTracks(genetrack, from = start, to =end)
}