coMET (version 1.4.4)

regulationBiomart_ENSEMBL: Create a regulation track from ENSEMBL

Description

Create a 'Regulation' track from ENSEMBL using the Gviz bioconductor package

Usage

regulationBiomart_ENSEMBL(gen, chr, start, end)

Arguments

gen

the name of the genome

chr

the chromosome of interest

start

the first position in the region of interest (the smallest value)

end

the last position in the region of interest (the largest value)

Value

An AnnotationTrack object of Gviz

References

http://bioconductor.org/packages/release/bioc/html/Gviz.html

Got to ENSEMBLregulation biomart

Examples

library("Gviz")
gen <- "hg19"
chr <- "chr7"
start <- 38290160
end <- 38303219

if(interactive()){
  regulationENSEMBLtrack<-regulationBiomart_ENSEMBL(gen,chr,start,end)
  plotTracks(regulationENSEMBLtrack, from = start, to =end) 
} else {
  data(regulationENSEMBLtrack)
  plotTracks(regulationENSEMBLtrack, from = start, to =end)
}