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coala (version 0.1.1)

conv_to_ms_arg.growth: Generate command line arguments for features

Description

These functions are exported only for technical reasons (because they are S3 methods) and are not intended for users.

Usage

## S3 method for class 'growth':
conv_to_ms_arg(feature, model)

## S3 method for class 'growth': conv_to_msms_arg(feature, model)

## S3 method for class 'growth': conv_to_scrm_arg(feature, model)

## S3 method for class 'growth': conv_to_seqgen_arg(feature, model)

## S3 method for class 'migration': conv_to_ms_arg(feature, model)

## S3 method for class 'migration': conv_to_msms_arg(feature, model)

## S3 method for class 'migration': conv_to_scrm_arg(feature, model)

## S3 method for class 'migration': conv_to_seqgen_arg(feature, model)

## S3 method for class 'mutation': conv_to_ms_arg(feature, model)

## S3 method for class 'mutation': conv_to_msms_arg(feature, model)

## S3 method for class 'mutation': conv_to_scrm_arg(feature, model)

## S3 method for class 'mutation': conv_to_seqgen_arg(feature, model)

## S3 method for class 'outgroup': conv_to_ms_arg(feature, model)

## S3 method for class 'outgroup': conv_to_msms_arg(feature, model)

## S3 method for class 'outgroup': conv_to_scrm_arg(feature, model)

## S3 method for class 'outgroup': conv_to_seqgen_arg(feature, model)

## S3 method for class 'pop_merge': conv_to_ms_arg(feature, model)

## S3 method for class 'pop_merge': conv_to_msms_arg(feature, model)

## S3 method for class 'pop_merge': conv_to_scrm_arg(feature, model)

## S3 method for class 'pop_merge': conv_to_seqgen_arg(feature, model)

## S3 method for class 'recombination': conv_to_ms_arg(feature, model)

## S3 method for class 'recombination': conv_to_msms_arg(feature, model)

## S3 method for class 'recombination': conv_to_scrm_arg(feature, model)

## S3 method for class 'recombination': conv_to_seqgen_arg(feature, model)

## S3 method for class 'sample': conv_to_ms_arg(feature, model)

## S3 method for class 'sample': conv_to_msms_arg(feature, model)

## S3 method for class 'sample': conv_to_scrm_arg(feature, model)

## S3 method for class 'sample': conv_to_seqgen_arg(feature, model)

## S3 method for class 'selection': conv_to_ms_arg(feature, model)

## S3 method for class 'selection': conv_to_scrm_arg(feature, model)

## S3 method for class 'selection': conv_to_msms_arg(feature, model)

## S3 method for class 'selection': conv_to_seqgen_arg(feature, model)

## S3 method for class 'size_change': conv_to_ms_arg(feature, model)

## S3 method for class 'size_change': conv_to_msms_arg(feature, model)

## S3 method for class 'size_change': conv_to_scrm_arg(feature, model)

## S3 method for class 'size_change': conv_to_seqgen_arg(feature, model)

## S3 method for class 'seg_sites_feat': conv_to_ms_arg(feature, model)

## S3 method for class 'seg_sites_feat': conv_to_msms_arg(feature, model)

## S3 method for class 'seg_sites_feat': conv_to_scrm_arg(feature, model)

## S3 method for class 'seg_sites_feat': conv_to_seqgen_arg(feature, model)

## S3 method for class 'trees_feat': conv_to_ms_arg(feature, model)

## S3 method for class 'trees_feat': conv_to_msms_arg(feature, model)

## S3 method for class 'trees_feat': conv_to_scrm_arg(feature, model)

## S3 method for class 'trees_feat': conv_to_seqgen_arg(feature, model)

## S3 method for class 'files_feat': conv_to_ms_arg(feature, model)

## S3 method for class 'files_feat': conv_to_msms_arg(feature, model)

## S3 method for class 'files_feat': conv_to_scrm_arg(feature, model)

## S3 method for class 'files_feat': conv_to_seqgen_arg(feature, model)

## S3 method for class 'unphased': conv_to_ms_arg(feature, model)

## S3 method for class 'unphased': conv_to_msms_arg(feature, model)

## S3 method for class 'unphased': conv_to_scrm_arg(feature, model)

## S3 method for class 'unphased': conv_to_seqgen_arg(feature, model)

conv_to_ms_arg(feature, model)

## S3 method for class 'default': conv_to_ms_arg(feature, model)

## S3 method for class 'default': conv_to_msms_arg(feature, model)

## S3 method for class 'default': conv_to_scrm_arg(feature, model)

## S3 method for class 'default': conv_to_seqgen_arg(feature, model)

Arguments

feature
The feature for which the argument is generated
model
The complete model for which the argument is generated

Methods (by class)

  • growth: Feature conversion
  • growth: Feature conversion
  • growth: Feature conversion
  • growth: Feature conversion
  • migration: Feature conversion
  • migration: Feature conversion
  • migration: Feature conversion
  • migration: Feature conversion
  • mutation: Feature conversion
  • mutation: Feature conversion
  • mutation: Feature conversion
  • mutation: Feature conversion
  • outgroup: Feature conversion
  • outgroup: Feature conversion
  • outgroup: Feature conversion
  • outgroup: Feature conversion
  • pop_merge: Feature conversion
  • pop_merge: Feature conversion
  • pop_merge: Feature conversion
  • pop_merge: Feature conversion
  • recombination: Feature conversion
  • recombination: Feature conversion
  • recombination: Feature conversion
  • recombination: Feature conversion
  • sample: Feature conversion
  • sample: Feature conversion
  • sample: Feature conversion
  • sample: Feature conversion
  • selection: Feature conversion
  • selection: Feature conversion
  • selection: Feature conversion
  • selection: Feature conversion
  • size_change: Feature conversion
  • size_change: Feature conversion
  • size_change: Feature conversion
  • size_change: Feature conversion
  • seg_sites_feat: Feature conversion
  • seg_sites_feat: Feature conversion
  • seg_sites_feat: Feature conversion
  • seg_sites_feat: Feature conversion
  • trees_feat: Feature conversion
  • trees_feat: Feature conversion
  • trees_feat: Feature conversion
  • trees_feat: Feature conversion
  • files_feat: Feature conversion
  • files_feat: Feature conversion
  • files_feat: Feature conversion
  • files_feat: Feature conversion
  • unphased: Feature conversion
  • unphased: Feature conversion
  • unphased: Feature conversion
  • unphased: Feature conversion
  • default: Feature conversion
  • default: Feature conversion
  • default: Feature conversion
  • default: Feature conversion