par_variation

A parameter whose value will be set variable.

The variance of the gamma distribution, which the values used
for simulation will follow.

variance

The function can be used to let the values of a parameter vary between
the different loci. When used, the values for the enclosed parameter
will follow a gamma distribution with mean of the parameters original
value, and the variance specified as argument <code>variance</code>. This requires
that the original value is always positive. When using this, the simulators
are called separately for each locus, which can dramatically increase the
time needed to simulate models with many loci.

Coalescent simulators can rapidly simulate biological sequences
    evolving according to a given model of evolution.
    This package allows to specify such models, transparently calls a suitable
    simulator, parses the results and calculates additional summary statistics.
    It supports the simulators 'ms', 'msms' and 'scrm' and can simulate
    finite-sites mutation models by combining the simulators with the program
    'seq-gen'.

par_variation: Let the parameter values vary between different loci

Description

Usage

Arguments