par_zero_inflation

A parameter whose value will be set variable.

The probability that the parameters value will be set to `0`
for each locus if <code>random</code> is <code>TRUE</code>. Otherwise, it's the
fixed fraction of loci which will have a parameter value of `0`.

prob

Whether the number of loci which are simulated with a value of
`0` should be random (<code>TRUE</code>) or a fixed fraction (<code>FALSE</code>). See
<code>prob</code> for details.

random

This adds a zero inflation to the distribution of a parameter for the
different loci. When using this, each locus will be simulated with a
parameter value of 0 with probability <code>prob</code>, or with parameter's
original value in the remaining cases.
are called separately for each locus, which can dramatically increase the
time needed to simulate models with many loci.

Coalescent simulators can rapidly simulate biological sequences
    evolving according to a given model of evolution.
    This package allows to specify such models, transparently calls a suitable
    simulator, parses the results and calculates additional summary statistics.
    It supports the simulators 'ms', 'msms' and 'scrm' and can simulate
    finite-sites mutation models by combining the simulators with the program
    'seq-gen'.

par_zero_inflation: Zero inflation for Parameters

Description

Usage

Arguments