sumstat_jsfs

The name of the summary statistic. When simulating a model,
the value of the statistics are written to an entry of the returned list
with this name. Summary statistic names must be unique in a model.

name

The populations for which the statistic is calculated.

populations

If <code>TRUE</code>, the JSFS is return for each locus instead
of globally. In this case, the result is a list, where each entry is the
JSFS for the corresponding locus.

per_locus

An optional function for transforming the results
of the statistic. If specified, the results of the transformation are
returned instead of the original values.

transformation

Calculates the Joint Site Frequency Spectrum from simulations

Coalescent simulators can rapidly simulate biological sequences
    evolving according to a given model of evolution.
    This package allows to specify such models, transparently calls a suitable
    simulator, parses the results and calculates additional summary statistics.
    It supports the simulators 'ms', 'msms' and 'scrm' and can simulate
    finite-sites mutation models by combining the simulators with the program
    'seq-gen'.

sumstat_jsfs: Calculates the Joint Site Frequency Spectrum from simulations

Description

Usage

Arguments