calc_sumstats_from_data

The coala model. The summary statistics present in this model
will be calculated. The model should fit to the data, in particular
regarding the number of loci and haploids.

model

Either a list of <code>segsites</code> objects, or an object
that can be converted using <code><a href="/link/as.segsites?package=coala&version=0.3.0" rd-options="" data-mini-rdoc="coala::as.segsites">as.segsites</a></code>. It is possible
to specify additional argument for the conversion using the <code>...</code>
argument

segsites_list

tree_list

If your model is using locus trios, then you need
can create these by combining individual loci. This is a list that defines
which loci are combined to a trio. Each entry should consist of either
one or three numbers. For one number, the locus used for ca

trios

Additional arguments that will be pass to
<code><a href="/link/as.segsites?package=coala&version=0.3.0" rd-options="" data-mini-rdoc="coala::as.segsites">as.segsites</a></code>.

This function calculates a model's summary statistic from biological data.
The data needs to be provided as a list of segregating sites objects. These
objects can be create using the <code><a href="/link/create_segsites?package=coala&version=0.3.0" rd-options="" data-mini-rdoc="coala::create_segsites">create_segsites</a></code> function.

Coalescent simulators can rapidly simulate biological sequences
    evolving according to a given model of evolution.
    You can use this package to specify such models, to conduct the simulations
    and to calculate additional statistics from the results.
    It relies on existing simulators for doing the simulation, and currently
    supports the programs 'ms', 'msms' and 'scrm'. It also supports finite-sites
    mutation models by combining the simulators with the program 'seq-gen'.

calc_sumstats_from_data: Calculate summary statistics for biological data

Description

Usage

Arguments