coalescentMCMC v0.4-1

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MCMC Algorithms for the Coalescent

Flexible framework for coalescent analyses in R. It includes a main function running the MCMC algorithm, auxiliary functions for tree rearrangement, and some functions to compute population genetic parameters.

Functions in coalescentMCMC

Name Description
dcoal Density Functions of Various Time-Dependent Coalescent Models
sim.coalescent Coalescent Simulation and Visualisation
treeOperators Trees Operators for Running MCMC
coalescentMCMC Run MCMC for Coalescent Trees
coalescentMCMC-internal Internal coalescentMCMC Functions
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Vignettes of coalescentMCMC

Name
CoalescentModels.Rnw
Running_coalescentMCMC.Rnw
coalescentMCMC.bib
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Details

Date 2015-03-03
ZipData no
License GPL (>= 2)
Packaged 2015-03-03 21:24:35 UTC; paradis
NeedsCompilation yes
Repository CRAN
Date/Publication 2015-03-03 22:37:48

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