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coalescentMCMC (version 0.4-1)

MCMC Algorithms for the Coalescent

Description

Flexible framework for coalescent analyses in R. It includes a main function running the MCMC algorithm, auxiliary functions for tree rearrangement, and some functions to compute population genetic parameters.

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Install

install.packages('coalescentMCMC')

Monthly Downloads

255

Version

0.4-1

License

GPL (>= 2)

Maintainer

Emmanuel Paradis

Last Published

March 3rd, 2015

Functions in coalescentMCMC (0.4-1)

dcoal

Density Functions of Various Time-Dependent Coalescent Models

sim.coalescent

Coalescent Simulation and Visualisation

treeOperators

Trees Operators for Running MCMC

coalescentMCMC

Run MCMC for Coalescent Trees

coalescentMCMC-internal

Internal coalescentMCMC Functions