cobiclust (version 0.1.2)

alpha_calculation: Calculate the matrix of interaction terms between groups of species and groups of sample

Description

Calculate the matrix of interaction terms between groups of species and groups of sample

Usage

alpha_calculation(
  s_ik = s_ik,
  t_jg = t_jg,
  nu_j = nu_j,
  mu_i = mu_i,
  K = K,
  G = G,
  x = x,
  exp_utilde = exp_utilde
)

Value

a matrix of dimension (K,G) of the terms of interactions.

Arguments

s_ik

s_ik.

t_jg

t_jg.

nu_j

nu_j.

mu_i

mu_i.

K

K.

G

G.

x

a matrix of observations. Columns correspond to biological samples and rows to microorganisms.

exp_utilde

exp_utilde.