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cobindR (version 1.10.0)

get.bindingsite.ranges: convenience function to convert predicted binding sites to GRanges object.

Description

Function converts predicted binding sites into a GRanges object (package: GenomicFeatures). This allows for easy interaction with other tools as well as output of different formats (bed, gff).

Usage

get.bindingsite.ranges(x, ...)

Arguments

x
An object of the class "cobindr", which will hold the predicted binding site locations.
...
optional additional parameters

Value

A GRanges object holding the positions of all predicted transcription factor binding sites relative to the input sequence.

See Also

get.pairs write.bindingsites write.bindingsites.table

Examples

Run this code
# export(get.bindingsite.ranges(runObj), "tfbs_hits.gff3")

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