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R package for COCA: Cluster-of-Clusters Analysis

Installing

You can install the latest released version of coca from CRAN with

install.packages("coca")

or the development version from GitHub with

library(devtools)
install_github("acabassi/coca")
library(coca)

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Version

Install

install.packages('coca')

Monthly Downloads

236

Version

1.1.0

License

MIT + file LICENSE

Issues

0

Pull Requests

0

Stars

6

Forks

2

Maintainer

Alessandra Cabassi

Last Published

July 6th, 2020

Functions in coca (1.1.0)

buildMOC

Build Matrix-Of-Clusters
chooseKusingAUC

Choose number of clusters based on AUC
computeAUC

Compute Area Under the Curve (AUC)
coca

Cluster-Of-Clusters Analysis
plotDunns

Plot Dunn's index
plotMOC

Plot Matrix-Of-Clusters
plotSilhouette

Plot silhouette
maximiseSilhouette

Choose K that maximises the silhouette from a set of kernel matrices and clusterings
fillMOC

Fill Matrix-Of-Clusters
plotWidestGap

Plot widest gap
consensusCluster

Consensus clustering
stratifiedSamplingForCV

Divide data into 5 subsets using stratified sampling
expandMOC

Expand matrix of clusters
plotDunn2s

Plot Dunn's alternative index
plotDeltaAUC

Plot area under the curve