Crohn

Microbiome composition at genus level from a Crohn's disease study: 48 taxa and 975 individuals
(662 patients with Crohn`s disease and 313 controls)

data

Functions for microbiome data analysis that take into account its compositional nature. Performs variable selection through penalized regression for both, cross-sectional and longitudinal studies, and for binary and continuous outcomes.

Toni Susin

coda4microbiome

Compositional Data Analysis for Microbiome Studies

Malu Calle

Meritxell Pujolassos

Crohn function

The dataset contains two objects:<dl>
<dt>x_Crohn</dt>
<dd>microbiome abundance matrix for 975 individuals (rows) and 48 genera (columns)</dd><dt>y_Crohn</dt>
<dd>a <code>factor</code>, indicating if the sample corresponds to a case (CD) or a control (no).</dd>
</dl>

Format

Crohn — Crohn

The dataset contains two objects:<dl>
<dt>x_Crohn</dt>
<dd>microbiome abundance matrix for 975 individuals (rows) and 48 genera (columns)</dd>

<dt>y_Crohn</dt>
<dd>a <code>factor</code>, indicating if the sample corresponds to a case (CD) or a control (no).</dd>


</dl>

Crohn: Crohn

Description

Arguments

Format

References