cogena (version 1.6.2)

geneExpInCluster: Get gene names in each clusters and the expression profiling.

Description

Get gene names in each clusters and the expression profiling. This output is helpful if user want to analyse the data for other application.

Usage

geneExpInCluster(object, method, nCluster)
"geneExpInCluster"(object, method = clusterMethods(object), nCluster = nClusters(object))

Arguments

object

a genecl or cogena object

method

as clMethods in genecl function

nCluster

as nClust in cogena function.

Value

a list containing a matrix of cluster_id with expression profiling and label a vector of the sample labels.

See Also

clEnrich

Examples

data(Psoriasis)
annofile <- system.file("extdata", "c2.cp.kegg.v5.0.symbols.gmt.xz", 
package="cogena")

## Not run: 
# genecl_result <- coExp(DEexprs, nClust=2:3, clMethods=c("hierarchical","kmeans"), 
#     metric="correlation", method="complete", ncore=2, verbose=TRUE)
# 
# clen_res <- clEnrich(genecl_result, annofile=annofile, sampleLabel=sampleLabel)
# 
# #geneExpInCluster
# geneExp <- geneExpInCluster(clen_res, "kmeans", "3")
# ## End(Not run)