Learn R Programming
cograph (version 2.0.0)

.create_cograph_network: Create Unified cograph_network Object

Description

Internal constructor that creates a cograph_network object with the unified format. Both cograph() and as_cograph() use this to ensure identical output.

Usage

.create_cograph_network(
  nodes,
  edges,
  directed,
  meta = list(),
  weights = NULL,
  data = NULL,
  node_groups = NULL,
  type = NULL
)

Value

A cograph_network object (named list with class).

Arguments

nodes

Data frame with node information (id, label, x, y, ...).

edges

Data frame with edge information (from, to, weight).

directed

Logical. Is the network directed?

meta

List with consolidated metadata: source, layout, tna sub-fields.

weights

Full n×n weight matrix for TNA compatibility, or NULL.

data

Original estimation data (sequence matrix, edge list, etc.), or NULL.

node_groups

Optional node groupings data frame.