cograph (version 2.0.0)

splot.net_permutation: Plot Nestimate Permutation Test Results

Description

Visualizes net_permutation objects from the Nestimate package. Differs from plot_permutation: p_values and effect_size are already p×p matrices (no edge-name parsing needed), and directed comes from x$x$directed.

Usage

splot.net_permutation(
  x,
  show_nonsig = FALSE,
  show_effect = FALSE,
  edge_positive_color = "#009900",
  edge_negative_color = "#C62828",
  edge_nonsig_color = "#888888",
  edge_nonsig_style = 2L,
  show_stars = TRUE,
  ...
)

Value

Invisibly returns the plot.

Arguments

x

A net_permutation object (from Nestimate).

show_nonsig

Logical: show non-significant edges? Default FALSE.

show_effect

Logical: show effect size in parentheses? Default FALSE.

edge_positive_color

Color for positive differences. Default "#009900".

edge_negative_color

Color for negative differences. Default "#C62828".

edge_nonsig_color

Color for non-significant edges. Default "#888888".

edge_nonsig_style

Line style for non-significant edges. Default 2L.

show_stars

Logical: show significance stars? Default TRUE.

...

Additional arguments passed to splot().