cograph (version 2.7.2)

plot_centrality_compare: Plot Centrality Comparison

Description

Compare a centrality measure across two or more groups using stacked, faceted, grouped, dumbbell, line, or two-group pyramid layouts. The "pyramid" style is a back-to-back horizontal bar chart for exactly two groups.

Usage

plot_centrality_compare(
  ...,
  measure = NULL,
  style = c("stacked", "facet", "grouped", "dumbbell", "line", "pyramid"),
  group_labels = NULL,
  group_colors = NULL,
  node_colors = NULL,
  sort_by = c("max", "delta", "first", "alpha"),
  top_n = NULL,
  scale = c("raw", "normalized"),
  show_values = TRUE,
  size_by_value = FALSE,
  size_range = c(2, 9),
  orientation = c("horizontal", "vertical"),
  ncol = NULL,
  title = NULL,
  subtitle = NULL,
  centrality_args = list()
)

Value

A ggplot object.

Arguments

...

Two or more centrality data frames (from centrality) or network inputs. Names are used as group labels when group_labels is NULL.

measure

Character, a single centrality measure to compare. If NULL, the first shared measure is used.

style

Character: "stacked" (default), "facet", "grouped", "dumbbell", "line", or "pyramid" (2 groups only).

group_labels

Character vector with one label per group. Default c("Group 1", "Group 2", ...).

group_colors

Character vector of colors, one per group. Default cycles through the cograph palette.

node_colors

Optional. Either a named character vector mapping node name to color, an unnamed vector of colors applied in node order, or the name of a palette ("cograph", "okabe", "viridis"). Used by style = "facet".

sort_by

"max" (default) ranks nodes by highest value across groups; "delta" by range; "first" by first group; "alpha" alphabetically.

top_n

Show top N nodes (by sort_by). Default: all.

scale

"raw" (default, native values on each side) or "normalized" ([0, 1] within each side before plotting).

show_values

Logical. Print the value inside each bar. Default TRUE.

size_by_value

Logical. For "dumbbell" style, scale dot size by centrality value. Default FALSE.

size_range

Numeric vector of length 2 giving the min and max dot size (mm) when size_by_value = TRUE. Default c(2, 9).

orientation

Character: "horizontal" (default, nodes on y-axis) or "vertical" (nodes on x-axis).

ncol

Number of facet columns for style = "facet". Default NULL chooses automatically.

title

Plot title.

subtitle

Plot subtitle. Auto-generated when NULL.

centrality_args

Named list of additional arguments passed to centrality when inputs are networks.

Examples

set.seed(1)
m1 <- matrix(runif(25), 5, 5); diag(m1) <- 0
m2 <- matrix(runif(25), 5, 5); diag(m2) <- 0
rownames(m1) <- colnames(m1) <- LETTERS[1:5]
rownames(m2) <- colnames(m2) <- LETTERS[1:5]
plot_centrality_compare(m1, m2, measure = "strength",
                        group_labels = c("Pre", "Post"))