plot_chord: Chord Diagram

Description

Draw a chord diagram where nodes are arcs on the outer ring and edges are curved ribbons (chords) connecting them. Arc size is proportional to total flow through each node and chord width is proportional to edge weight.

Usage

plot_chord(
  x,
  directed = NULL,
  segment_colors = NULL,
  segment_border_color = "white",
  segment_border_width = 1,
  segment_pad = 0.02,
  segment_width = 0.08,
  chord_color_by = "source",
  chord_alpha = 0.5,
  chord_border = NA,
  self_loop = TRUE,
  labels = NULL,
  label_size = 1,
  label_color = "black",
  label_offset = 0.05,
  label_threshold = 0,
  threshold = 0,
  ticks = FALSE,
  tick_interval = NULL,
  tick_labels = TRUE,
  tick_size = 0.6,
  tick_color = "grey30",
  start_angle = pi/2,
  clockwise = TRUE,
  title = NULL,
  title_size = 1.2,
  background = NULL,
  ...
)

Value

Invisibly returns a list with components segments (data frame of segment angles and flows) and chords (data frame of chord endpoints and weights).

Arguments

x: A weight matrix, cograph_network, CographNetwork, tna, igraph, or list-like object with a matrix weights component.
directed: Logical. If NULL (default), auto-detected from matrix symmetry.
segment_colors: Colors for the outer ring segments. NULL uses a built-in vibrant palette.
segment_border_color: Border color for segments.
segment_border_width: Border width for segments.
segment_pad: Gap between segments in radians.
segment_width: Radial thickness of the outer ring as a fraction of the radius.
chord_color_by: How to color chords: "source" (default), "target", or a color vector of length matching the number of non-zero edges.
chord_alpha: Alpha transparency for chords.
chord_border: Border color for chords. NA for no border.
self_loop: Logical. Currently accepted for API compatibility; the current matrix preparation preserves self-loop chords.
labels: Node labels. NULL uses row names, FALSE suppresses labels.
label_size: Text size multiplier for labels.
label_color: Color for labels.
label_offset: Radial offset of labels beyond the outer ring.
label_threshold: Hide labels for nodes whose flow fraction is below this value.
threshold: Minimum absolute weight to show a chord.
ticks: Logical. Draw tick marks along the outer ring to indicate magnitude?
tick_interval: Spacing between ticks in the same units as the weight matrix. NULL (default) auto-selects a nice interval.
tick_labels: Logical. Show numeric labels at major ticks?
tick_size: Text size multiplier for tick labels.
tick_color: Color for tick marks and labels.
start_angle: Starting angle in radians (default pi/2, top).
clockwise: Logical. Lay out segments clockwise?
title: Optional plot title.
title_size: Text size multiplier for the title.
background: Background color for the plot. NULL (default) uses the current device background.
...: Additional arguments (currently ignored).

Details

The diagram is drawn entirely with base R graphics using polygon() for segments and chords, and bezier_points() for the curved ribbons.

For directed networks, each segment is split into an outgoing half and an incoming half so that chords attach to the correct side. For undirected networks each edge is drawn once and the full segment arc is shared.

Examples

Run this code

# Weighted directed matrix
mat <- matrix(c(
   0, 25,  5, 15,
  10,  0, 20,  8,
   3, 18,  0, 30,
  20,  5, 10,  0
), 4, 4, byrow = TRUE,
dimnames = list(c("A", "B", "C", "D"), c("A", "B", "C", "D")))

plot_chord(mat)
plot_chord(mat, chord_alpha = 0.6, ticks = TRUE)

# A transition network
plot_chord(regulation_net, ticks = TRUE, segment_width = 0.10)

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