cograph (version 2.7.2)

splot.tna_disparity: Plot Disparity Results with splot

Description

Plot Disparity Results with splot

Usage

splot.tna_disparity(
  x,
  show = c("styled", "backbone", "full"),
  edge_style_sig = 1,
  edge_style_nonsig = 2,
  alpha_nonsig = 0.3,
  ...
)

Value

Invisibly returns the value from the underlying splot

call. Called primarily for the side effect of producing a plot.

Arguments

x

A tna_disparity object.

show

What to display: "styled" (default), "backbone", "full".

edge_style_sig

Line style for backbone edges. Default 1 (solid).

edge_style_nonsig

Line style for non-backbone edges. Default 2 (dashed).

alpha_nonsig

Alpha for non-backbone edges. Default 0.3.

...

Additional arguments passed to splot.

Examples

mat <- matrix(c(0.0, 0.5, 0.1, 0.0, 0.3, 0.0, 0.4, 0.1,
                0.1, 0.2, 0.0, 0.5, 0.0, 0.1, 0.3, 0.0), 4, 4, byrow = TRUE)
rownames(mat) <- colnames(mat) <- c("A", "B", "C", "D")
disp <- disparity_filter(cograph(mat), level = 0.05)
splot(disp)
splot(disp, show = "backbone")