ColocalizedFullSearch

choose

<p>Number of cores for parallel processing. Leaving this blank causes the program to use default (series) processing</p>

cores

<p>Wrapper for <code>colocalized</code> that searches every chromosome shared
between the given .bed files.</p>

Also abbreviates to "CCSeq". Finds clusters of colocalized sequences in .bed annotation files
up to a specified cut-off distance. Two sequences are colocalized if they
are within the cut-off distance of each other, and clusters are sets of
sequences where each sequence is colocalized to at least one other sequence
in the cluster. For a set of .bed annotation tables provided in a list
along with a cut-off distance, the program will output a file containing
the locations of each cluster. Annotated .bed files are from
the 'pwmscan' application at <https://ccg.epfl.ch/pwmtools/pwmscan.php>.
Personal machines might crash or take excessively long depending
on the number of annotated sequences in each file and whether chromsearch()
or gensearch() is used.

ColocalizedFullSearch: Colocalized full search.

Description

Usage

Arguments

Value