colocalized (version 0.2.0)

colocalized_sequential: Sequential cluster search

Description

Search one chromosome for clusters using default non-parallel processing.

Usage

colocalized_sequential(choose, chr, n)

Arguments

choose

List of .bed tables

chr

Chromosome to be searched given as e.g. "chr19"

n

Cut-off distance between colocalized sequences

Value

Table containing the addresses (as one dimensional intervals) of the members of every cluster, with some annotation data.

Examples

# NOT RUN {
complex<-list(nfkb1,nfkb2,relb)
colocalized_sequential(complex,"chrY",150)
# }