relb

datasets

Also abbreviates to "CCSeq". Finds clusters of colocalized sequences in .bed annotation files
up to a specified cut-off distance. Two sequences are colocalized if they
are within the cut-off distance of each other, and clusters are sets of
sequences where each sequence is colocalized to at least one other sequence
in the cluster. For a set of .bed annotation tables provided in a list
along with a cut-off distance, the program will output a file containing
the locations of each cluster. Annotated .bed files are from
the 'pwmscan' application at <https://ccg.epfl.ch/pwmtools/pwmscan.php>.
Personal machines might crash or take excessively long depending
on the number of annotated sequences in each file and whether chromsearch()
or gensearch() is used.

Stefan Golas

colocalized

Clusters of Colocalized Sequences

relb function

<p>A dataframe with 1448 rows and 8 columns</p>

relb: RELB bed file

Description

Usage

Arguments

Format