Internal compareGroups functions
chisq.test2(obj, chisq.test.perm, chisq.test.B, chisq.test.seed)
combn2(x)
compareGroups.fit(X, y, Xext, selec, method, timemax, alpha, min.dis, max.ylev, max.xlev,
include.label, Q1, Q3, simplify, ref, ref.no, fact.ratio, ref.y, p.corrected,
compute.ratio, include.miss, oddsratio.method, chisq.test.perm, byrow,
chisq.test.B, chisq.test.seed, Date.format, var.equal, conf.level, surv)
compare.i(x, y, selec.i, method.i, timemax.i, alpha, min.dis, max.xlev, varname, Q1, Q3,
groups, simplify, Xext, ref, fact.ratio, ref.y, p.corrected, compute.ratio,
include.miss, oddsratio.method, chisq.test.perm, byrow,chisq.test.B,
chisq.test.seed, Date.format, var.equal, conf.level, surv)
descripSurv(x, y, timemax, surv)
descrip(x, y, method, Q1, Q3, conf.level)
confinterval(x, method, conf.level)
flip(x)
format2(x, digits = NULL, ...)
formula.compareGroups(x, ...)
logrank.pval(x,y)
signifdec.i(x, digits)
signifdec(x, digits)
summ.i(x)
table.i(x, hide.i, digits, digits.ratio, type, varname, hide.i.no, digits.p, sd.type,
q.type, spchar, show.ci)
update.formula2(old, new)
KMg.plot(x, y, file, var.label.x, var.label.y, ...)
Cox.plot(x, y, file, var.label.x, var.label.y, ...)
bar2.plot(x, y, file, var.label.x, var.label.y, perc, byrow, ...)
box.plot(x, y, file, var.label.x, var.label.y, ...)
KM.plot(x, file, var.label.x, ...)
bar.plot(x, file, var.label.x, perc, ...)
norm.plot(x, file, var.label.x, z, n.breaks, ...)
prepare(x, nmax, header.labels)
snpQC(X, sep, verbose)
export2mdcbind(x, which.table, nmax, header.labels, caption, strip, first.strip,
background, width, size, landscape, format, header.background, header.color,
position, ...)
export2mdword(x, which.table, nmax, header.labels, caption, strip,
first.strip, background, size, header.background, header.color)
export2mdwordcbind(x, which.table, nmax, header.labels, caption, strip,
first.strip, background, size, header.background, header.color)
trim(x)These are not to be called by the user