renameMCMC

This is useful because an MCMC method name appears in multiple
places

Manages comparison of MCMC performance metrics from multiple MCMC algorithms. These may come from different MCMC configurations using the 'nimble' package or from other packages. Plug-ins for JAGS via 'rjags' and Stan via 'rstan' are provided. It is possible to write plug-ins for other packages. Performance metrics are held in an MCMCresult class along with samples and timing data. It is easy to apply new performance metrics. Reports are generated as html pages with figures comparing sets of runs. It is possible to configure the html pages, including providing new figure components.

Perry de Valpine

compareMCMCs

Compare MCMC Efficiency from 'nimble' and/or Other MCMC Engines

Sally Paganin

Daniel Turek

Christopher Paciorek

renameMCMC function

<dl><dt>MCMCresult</dt>
<dd>One or a named list of <code>MCMCresult</code> objects, such
as returned by <code>compareMCMCs</code>.</dd>
<dt>newName</dt>
<dd>A new (replacement) name for one of the MCMC method
names</dd>
<dt>oldName</dt>
<dd>An old (existing) name for one of the MCMC method
names</dd></dl>

Arguments

Rename an MCMC method throughout a list of MCMCresult objects — renameMCMC

<dl>

<dt>MCMCresult</dt>
<dd>One or a named list of <code>MCMCresult</code> objects, such
as returned by <code>compareMCMCs</code>.</dd>


<dt>newName</dt>
<dd>A new (replacement) name for one of the MCMC method
names</dd>


<dt>oldName</dt>
<dd>An old (existing) name for one of the MCMC method
names</dd>

</dl>

renameMCMC: Rename an MCMC method throughout a list of `MCMCresult` objects

Description

Usage

Arguments

Details