atomdeps

List of the atom dependencies and typical bond parameters in protein structures for side chains of the
20 standard amino acid types.

datasets

Manipulate and analyze 3-D structural geometry of Protein Data Bank (PDB) files.

Samuel Wong

compas

Conformational Manipulations of Protein Atomic Structures

atomdeps function

A list for the 20 amino acid types, each having the attributes<ul>
<li>"tangle": Dihedral angle defined by atoms A-B-C-D as described below. <code>NA</code>'s represent the free side chain dihedral angles chi for that amino acid.</li>
<li>"names": The component atoms of the amino acid side chain. Represents atom D in the dihedral.</li>
<li>"matx": The names of atoms A,B,C in the dihedral, with rows corresponding to the atoms in "names".</li>
<li>"bangle": Planar bond angle formed between B-C-D</li>
<li>"blength": Bond length between C-D</li>
</ul>

atomdeps: Atom parameters and definitions for side chains

Description

Usage

Arguments

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References