comradesOO (version 0.1.1)

clusterComrades: clusterComrades

Description

This method clusters the duplexes.

Usage

clusterComrades(cds, cores = 3, stepCount = 2, clusterCutoff = 20)

Value

A comradesDataSet object

Arguments

cds

comradesDataSet object created with comradesDataSet

cores

numeric - The number of cores to use

stepCount

Stringency for clustering

clusterCutoff

The minimum number of reads a cluster requires

Examples

cds = makeExampleComradesDataSet()

clusterComrades(cds,
                cores = 1,
                stepCount = 1,
                clusterCutoff = 0)