findBasePairsRNAfold

Folds the clusters using Vienna RNA duplex

Analysis of RNA crosslinking data for RNA structure prediction. The package is suitable for the analysis of RNA structure cross-linking data and chemical probing data.

Jonathan Price

comradesOO

Analysis of COMRADES (Cross-Linking Matched RNA and Deep
Sequencing) Data

findBasePairsRNAfold function

<dl><dt>startPos</dt>
<dd>Start of the cluster side x</dd>
<dt>endPos</dt>
<dd>End of the cluster side x</dd>
<dt>seqs</dt>
<dd>Sequence of x</dd>
<dt>fasta</dt>
<dd><code>rnaRefs</code></dd>
<dt>shape</dt>
<dd>shape reactivities</dd></dl>

Arguments

findBasePairsRNAfold — findBasePairsRNAfold

<dl>

<dt>startPos</dt>
<dd>Start of the cluster side x</dd>


<dt>endPos</dt>
<dd>End of the cluster side x</dd>


<dt>seqs</dt>
<dd>Sequence of x</dd>


<dt>fasta</dt>
<dd><code>rnaRefs</code></dd>


<dt>shape</dt>
<dd>shape reactivities</dd>

</dl>

findBasePairsRNAfold: findBasePairsRNAfold

Description

Usage

Value

Arguments