getAdjacancyMat

Makes and adjacency matrix list (for clustering)

Analysis of RNA crosslinking data for RNA structure prediction. The package is suitable for the analysis of RNA structure cross-linking data and chemical probing data.

Jonathan Price

comradesOO

Analysis of COMRADES (Cross-Linking Matched RNA and Deep
Sequencing) Data

getAdjacancyMat function

<dl><dt>hybGranges</dt>
<dd>list created with hybToGRanges (but just the gap section of the list)</dd>
<dt>nucletideOrPerc</dt>
<dd>measure difference by percentage or nucleotides</dd>
<dt>cutoff</dt>
<dd>The maximum difference before giving these two gaps 0</dd></dl>

Arguments

getAdjacancyMat — getAdjacancyMat

<dl>

<dt>hybGranges</dt>
<dd>list created with hybToGRanges (but just the gap section of the list)</dd>


<dt>nucletideOrPerc</dt>
<dd>measure difference by percentage or nucleotides</dd>


<dt>cutoff</dt>
<dd>The maximum difference before giving these two gaps 0</dd>

</dl>

getAdjacancyMat: getAdjacancyMat

Description

Usage

Value

Arguments

Details