getMatrices

Make a matrix of contact interactions

Analysis of RNA crosslinking data for RNA structure prediction. The package is suitable for the analysis of RNA structure cross-linking data and chemical probing data.

Jonathan Price

comradesOO

Analysis of COMRADES (Cross-Linking Matched RNA and Deep
Sequencing) Data

getMatrices function

<dl><dt>hybList</dt>
<dd>the original hybList created with readHybFiles or subsetHybList</dd>
<dt>rna</dt>
<dd>the RNA of interest that you want to subset</dd>
<dt>size</dt>
<dd>The size of the RNA</dd></dl>

Arguments

getMatrices — getMatrices

<dl>

<dt>hybList</dt>
<dd>the original hybList created with readHybFiles or subsetHybList</dd>


<dt>rna</dt>
<dd>the RNA of interest that you want to subset</dd>


<dt>size</dt>
<dd>The size of the RNA</dd>

</dl>

getMatrices: getMatrices

Description

Usage

Value

Arguments

Details