printClustersFast

Makes a table with the coordinates of the clusters

Analysis of RNA crosslinking data for RNA structure prediction. The package is suitable for the analysis of RNA structure cross-linking data and chemical probing data.

Jonathan Price

comradesOO

Analysis of COMRADES (Cross-Linking Matched RNA and Deep
Sequencing) Data

printClustersFast function

<dl><dt>dir</dt>
<dd>the directory that contains the *hybrids.hyb files</dd>
<dt>clustering</dt>
<dd>The output from the iGraph function cluster_walktrap for the (made with adjacency matrix input)</dd>
<dt>highest_clusters</dt>
<dd>The cluster you are interested in keeping</dd>
<dt>left</dt>
<dd>list created with hybToGRanges (but just the left section of the list)</dd>
<dt>right</dt>
<dd>list created with hybToGRanges (but just the right section of the list)</dd></dl>

Arguments

printClustersFast — printClustersFast

<dl>

<dt>dir</dt>
<dd>the directory that contains the *hybrids.hyb files</dd>


<dt>clustering</dt>
<dd>The output from the iGraph function cluster_walktrap for the (made with adjacency matrix input)</dd>


<dt>highest_clusters</dt>
<dd>The cluster you are interested in keeping</dd>


<dt>left</dt>
<dd>list created with hybToGRanges (but just the left section of the list)</dd>


<dt>right</dt>
<dd>list created with hybToGRanges (but just the right section of the list)</dd>

</dl>

printClustersFast: printClustersFast

Description

Usage

Value

Arguments

Details