S3 plot method for object of class"S2CFA"
# S3 method for S2CFA
plot(
x,
type = "ex.fisher.test",
fill = c("red", "grey"),
adjalpha = "bonferroni",
...
)a plot visualizing the results.
object of class"S2CFA"
character with default type="ex.fisher.test", to return wether the observed pattern are 'discriminating Types' or not significant at all based on the respective p-value. Another option for type is type="pChi".
a vector of (two) colors defining the coloring of discriminating 'Types' (default "red"), or not discriminating cells (default "grey") in the plot.
character with default adjalpha = "bonferroni". Selector for the type of alpha adjustment for multiple testing. Possible options are: adjalpha = "none", for no adjustment; adjalpha = "bonferroni", for bonferroni adjustment (default); adjalpha = "holm", for alpha adjustment according to Holm (1979); other options to come ... .
other parameters passed trough.
Holm, S. (1979). A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics, 6(2), 65–70.
Bonferroni, C. E. (1935). Il calcolo delle assicurazioni su gruppi di teste. In S.O. Carboni (Ed.), Studi in Onore del Professore Salvatore Ortu Carboni (S. 13–60). Roma, Tipografia del Senato: Bardi.