connector-options


<div class="section" id="verbosity-level">
<h3>verbosity_level</h3><p></p><p>
</p><p>Verbosity level for functions in connector.
See zephyr::verbosity_level for details.</p><ul>
<li><p>Default: <code>"verbose"</code></p></li>
<li><p>Option: <code>connector.verbosity_level</code></p></li>
<li><p>Environment: <code>R_CONNECTOR_VERBOSITY_LEVEL</code></p></li>
</ul><p></p><p></p></div><p></p><p><div class="section" id="overwrite">
<h3>overwrite</h3></div></p><p>
</p><p>Overwrite existing content if it exists in the connector?
See connector-options for details. Default can be set globally with
<code>options(connector.overwrite = TRUE/FALSE)</code> or environment variable
<code>R_CONNECTOR_OVERWRITE</code>.</p><ul>
<li><p>Default: <code>FALSE</code></p></li>
<li><p>Option: <code>connector.overwrite</code></p></li>
<li><p>Environment: <code>R_CONNECTOR_OVERWRITE</code></p></li>
</ul><p></p><p></p><p><div class="section" id="logging">
<h3>logging</h3></div></p><p>
</p><p>Add logging capability to connectors using <code>add_logs()</code>.
When <code>TRUE</code>, all connector operations will be logged to the console and
to whirl log HTML files. See log-functions for available
logging functions.</p><ul>
<li><p>Default: <code>FALSE</code></p></li>
<li><p>Option: <code>connector.logging</code></p></li>
<li><p>Environment: <code>R_CONNECTOR_LOGGING</code></p></li>
</ul><p></p><p></p><p><div class="section" id="default-ext">
<h3>default_ext</h3></div></p><p>
</p><p>Default extension to use when reading and writing files when not
specified in the file name. E.g. with the default 'csv', files are assumed
to be in CSV format if not specified.</p><ul>
<li><p>Default: <code>"csv"</code></p></li>
<li><p>Option: <code>connector.default_ext</code></p></li>
<li><p>Environment: <code>R_CONNECTOR_DEFAULT_EXT</code></p></li>
</ul><p></p><p>
</p>

Provides a consistent interface for connecting R to various
data sources including file systems and databases.
Designed for clinical research, 'connector' streamlines access to 'ADAM',
'SDTM' for example. It helps to deal with multiple data formats through a standardized API and centralized
configuration.

Cervan Girard

connector

Streamlining Data Access in Clinical Research

Aksel Thomsen

Vladimir Obucina

Novo Nordisk A/S 

connector-options function


<div class='section' id='verbosity-level'>
<h3>verbosity_level</h3>


<p>Verbosity level for functions in connector.
See zephyr::verbosity_level for details.</p><ul>
<li><p>Default: <code>"verbose"</code></p></li>
<li><p>Option: <code>connector.verbosity_level</code></p></li>
<li><p>Environment: <code>R_CONNECTOR_VERBOSITY_LEVEL</code></p></li>
</ul>

</div>

<div class='section' id='overwrite'>
<h3>overwrite</h3>


<p>Overwrite existing content if it exists in the connector?
See connector-options for details. Default can be set globally with
<code>options(connector.overwrite = TRUE/FALSE)</code> or environment variable
<code>R_CONNECTOR_OVERWRITE</code>.</p><ul>
<li><p>Default: <code>FALSE</code></p></li>
<li><p>Option: <code>connector.overwrite</code></p></li>
<li><p>Environment: <code>R_CONNECTOR_OVERWRITE</code></p></li>
</ul>

</div>

<div class='section' id='logging'>
<h3>logging</h3>


<p>Add logging capability to connectors using <code>add_logs()</code>.
When <code>TRUE</code>, all connector operations will be logged to the console and
to whirl log HTML files. See log-functions for available
logging functions.</p><ul>
<li><p>Default: <code>FALSE</code></p></li>
<li><p>Option: <code>connector.logging</code></p></li>
<li><p>Environment: <code>R_CONNECTOR_LOGGING</code></p></li>
</ul>

</div>

<div class='section' id='default-ext'>
<h3>default_ext</h3>


<p>Default extension to use when reading and writing files when not
specified in the file name. E.g. with the default 'csv', files are assumed
to be in CSV format if not specified.</p><ul>
<li><p>Default: <code>"csv"</code></p></li>
<li><p>Option: <code>connector.default_ext</code></p></li>
<li><p>Environment: <code>R_CONNECTOR_DEFAULT_EXT</code></p></li>
</ul>

</div>


connector-options: Options for connector

Description

verbosity_level

overwrite

logging

default_ext

Arguments